© 2023 by Alon Greenbaum, greenbaum@unc.edu; greenbaum@ncsu.edu, Raliegh NC. Proudly created with Wix.com

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Publications

  • P. S. Rajendran, R. C. Challis, C. C. Fowlkes, P. Hanna, J. D. Tompkins, M. C. Jordan, S. Hiyari, B. Gabris-Weber, A. Greenbaum, K. Y. Chan, B. E. Deverman, H. Münzberg, J. L. Ardell, G. Salama, V. Gradinaru, K. Shivkumar, “Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies,” Nature Communications, 10, 1944 (2019).

  • A. Greenbaum, M. J. Jang, C. Challis and V. Gradinaru, “Q&A: How can advances in tissue clearing and optogenetics contribute to our understanding of normal and diseased biology?” BMC Biology, 15, 87 (2017).

  • A. Greenbaum*, K. Chan*, T. Dobreva, D. Brown, D. H. Balani, R. Boyce, H. M. Kronenberg, H. J. McBride and V. Gradinaru, “Bone CLARITY: Clearing, imaging, and computational analysis of osteoprogenitors within intact bone marrow,” Science Translational Medicine, 9, eaah6518 (2017). (*) Joint first author.

  • K. Chan, M. J. Jang, B. B. Yoo, A. Greenbaum, N. Ravi, W.-L. Wu, S. K. Mazmanian, B. E. Deverman, and V. Gradinaru, “Engineered adeno- associated viruses for efficient and noninvasive gene delivery throughout the central and peripheral nervous systems,” Nature Neuroscience, 20, 1172-1179 (2017).

  • J. R. Cho, J. B. Treweek, J. E. Robinson, C. Xiao, L. R. Bremner, A. Greenbaum and V. Gradinaru, “Dorsal Raphe Dopamine Neurons Modulate Arousal and Promote Waking by Salient Stimuli,” Neuron, 94, 1205-1219 (2017).

  •  A. Feizi, Y. Zhang, A. Greenbaum, A. Guziak, M. Luong, R.Y. Chan, B. Berg, H. Ozkan, W. Luo, M. Wu, Y. Wu, and A. Ozcan,” Rapid, portable and cost-effective yeast cell viability and concentration analysis using lensfree on-chip microscopy and machine learning,” Lab Chip, 16, 4350-4358 (2016).

  • S. Shah*, E. Lubeck*, M. Schwarzkopf*, T. He*, A. Greenbaum*, C. H. Sohn, A. Lignell, H. M. T. Choi, V. Gradinaru, N. A. Pierce, and  L. Cai, “Single-molecule RNA detection at depth via hybridization chain reaction and tissue hydrogel embedding and clearing,” Development, 143, 2862-2867 (2016).  (*) Joint first author.

  • J. B. Treweek, B. Yang, N. Flytzanis, K. Chan, B. E.  Deverman, A. Greenbaum, A. Lignell, C. Xiao, L. Cai, M. S. Ladinsky, P. Bjorkman, C. C.  Fowlkes, and V. Gradinaru, “Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping,” Nature Protocols, 10, 1860-1896 (2015).

  • W. Luo, F. Shabbir, C. Gong, C. Gulec, J. Pigeon, J. Shaw, A. Greenbaum, S. Tochitsky, C. Joshi, and A. Ozcan, “High throughput on-chip analysis of high-energy charged particle tracks using lensfree imaging,” APL 106, 151107 (2015).

  • E. McLeod, T.U. Dincer, M. Veli, Y.N. Ertas, C. Nguyen, W. Luo, A. Greenbaum, A. Feizi, and A. Ozcan, “High-throughput and label-free single nanoparticle sizing based on time-resolved on-chip microscopy,” ACS Nano 9, 3265-3273 (2015).

  • W. Luo*, A. Greenbaum*, Y. Zhang, and A. Ozcan, “Synthetic aperture based on-chip microscopy,” Light: Science & Applications, 4, e261 (2015). (*) Joint first author.

  • A. Greenbaum, Y. Zhang, A. Feizi, P. L. Chung, W. Luo, S. R. Kandukuri and A. Ozcan, “Wide-field computational imaging of pathology slides using lens-free on-chip microscopy,” Science Translational  Medicine 6, 267ra175 (2014).

  • A. Greenbaum, A. Feizi, N. Akbari, W. Luo, and A. Ozcan, “Field portable pixel super-resolution colour microscope,” PLoS ONE 8, e76475 (2013). 

  • A. Greenbaum, A. Feizi, N. Akbari, and A. Ozcan, “Wide-field computational color imaging using pixel super-resolved on-chip microscopy,” Opt. Express 21, 12469-12483 (2013).

  • A. Greenbaum, W. Luo, B. Khademhosseinieh, T. W. Su, A.F. Coskun, and A. Ozcan, “Increased space-bandwidth product in pixel super-resolved lensfree on-chip microscopy,” Sci. Rep. 3, 1717 (2013).

  • E. McLeod, W. Luo, O. Mudanyali, A. Greenbaum, and A. Ozcan, “Toward giga-pixel nanoscopy on a chip: a computational wide-field look at the nano-scale without the use of lenses,” Lab Chip 13, 2028-2035 (2013). 

  • O. Mudanyali, E. McLeod, W. Luo, A. Greenbaum, A. Coskun, Y. Hennequin, C. Allier, and A. Ozcan, “Wide-field optical detection of nano-particles using on-chip microscopy and self-assembled nano-lenses,” Nature Photonics, 7, 247–254 (2013).

  • H. Zhu, S. O. Isikman, O. Mudanyali, A. Greenbaum and A. Ozcan, “Optical Imaging techniques for point-of-care diagnostics,” Lab Chip 13, 51-67 (2013).

  • J. Weidling, S.O. Isikman, A. Greenbaum, A. Ozcan, E. Botvinick, “Lens-free computational imaging of capillary morphogenesis within three-dimensional substrates,” J. Biomed. Opt. 17, 126018-126018 (2012). 

  •  S. O. Isikman, A. Greenbaum*, W. Luo, A. Coskun, and A. Ozcan, " Giga-pixel lensfree holographic microscopy and tomography using color image sensors," PLoS ONE 7, e45044 (2012). (*) Joint first author.

  • A. Greenbaum, W. Luo, T-W. Su, Z. Gorocs, L. Xue, S.O. Isikman, A.F. Coskun, O. Mudanyali, and A. Ozcan, “Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy,” Nature Methods 9, 889-895 (2012).

  • A. Greenbaum, and A. Ozcan, “Maskless imaging of dense samples using pixel super-resolution based multi-height lensfree on-chip microscopy,” Opt. Express 20, 3129-3143 (2012).

  • A. Greenbaum, U. Sikora, and A. Ozcan, “Field-portable wide-field microscopy of dense samples using multi-height pixel super-resolution based lensfree imaging,” Lab Chip 12, 1242-1245 (2012).

  • S. O. Isikman, A. Greenbaum, M. Lee, W. Bishara, O. Mudanyali, T. W. Su and A. Ozcan, "Lensfree computational microscopy tools for cell and tissue imaging at the point-of-care and in low-resource settings," Anal. Cell. Pathology 36, 1-19 (2012).

  • G. Biener, A. Greenbaum, S.O. Isikman, K. Lee, D. Tseng and A. Ozcan, “Combined reflection and transmission microscope for telemedicine applications in field settings,” Lab Chip 11, 2738-2743 (2011).

  • A. Greenbaum, S. Anava, A. Ayali, M. Shein, M. David-Pur, E. Ben-Jacob and Y. Hanein. “One to one neuron-electrode interfacing,” J. Neurosci. Meth. 182, 219-224 (2009).

  • R. Sorkin, A. Greenbaum, M. David-Pur, S. Anava, A. Ayali, E. Ben-Jacob, and Yael Hanein, “Process entanglement as a neuronal adhesion mechanism,” Nanotechnology 20, 015101 (2009).

  • S. Anava, A. Greenbaum, E. Ben Jacob, Y. Hanein and A. Ayali, “The regulative role of neurite mechanical tension in network development,” Biophys. J. 96, 1661-1670 (2009).

  • M. Shein, A. Greenbaum, T. Gabay, R. Sorkin, M. David-Pur, E. Ben-Jacob, and Y. Hanein, “Engineered neuronal circuits shaped and interfaced with carbon nanotube microelectrode arrays,” Biomed. Microdevices 11, 495-501 (2009).